After reviewing the code of both Blogger's default layout and my own layout, I realize there is another easy way to solve the feed issue if you are using Blogger. You won't need to add any auto-discovery links in your head section. Instead, add this piece of code right after your opening <head> tag:
<b:include data='blog' name='all-head-content'/>
I suppose Blogger has the auto-discovery feature embedded to it (the all-head-content), so that should fix the problem. Speaking of which, this code will only work on the new Blogger layout. If you are using the old one, you will have to search for the old syntax.
Hopefully this helps :)
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